KMeansIncrementalSPExtension.java
/*
* Copyright (c) 2017, WSO2 Inc. (http://www.wso2.org) All Rights Reserved.
*
* WSO2 Inc. licenses this file to you under the Apache License,
* Version 2.0 (the "License"); you may not use this file except
* in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/
package org.wso2.extension.siddhi.execution.streamingml.clustering.kmeans;
import org.apache.log4j.Logger;
import org.wso2.extension.siddhi.execution.streamingml.clustering.kmeans.util.Clusterer;
import org.wso2.extension.siddhi.execution.streamingml.clustering.kmeans.util.DataPoint;
import org.wso2.extension.siddhi.execution.streamingml.clustering.kmeans.util.KMeansModel;
import org.wso2.extension.siddhi.execution.streamingml.clustering.kmeans.util.KMeansModelHolder;
import org.wso2.extension.siddhi.execution.streamingml.util.CoreUtils;
import org.wso2.siddhi.annotation.Example;
import org.wso2.siddhi.annotation.Extension;
import org.wso2.siddhi.annotation.Parameter;
import org.wso2.siddhi.annotation.ReturnAttribute;
import org.wso2.siddhi.annotation.util.DataType;
import org.wso2.siddhi.core.config.SiddhiAppContext;
import org.wso2.siddhi.core.event.ComplexEventChunk;
import org.wso2.siddhi.core.event.stream.StreamEvent;
import org.wso2.siddhi.core.event.stream.StreamEventCloner;
import org.wso2.siddhi.core.event.stream.populater.ComplexEventPopulater;
import org.wso2.siddhi.core.exception.SiddhiAppCreationException;
import org.wso2.siddhi.core.executor.ConstantExpressionExecutor;
import org.wso2.siddhi.core.executor.ExpressionExecutor;
import org.wso2.siddhi.core.executor.VariableExpressionExecutor;
import org.wso2.siddhi.core.query.processor.Processor;
import org.wso2.siddhi.core.query.processor.stream.StreamProcessor;
import org.wso2.siddhi.core.util.config.ConfigReader;
import org.wso2.siddhi.query.api.definition.AbstractDefinition;
import org.wso2.siddhi.query.api.definition.Attribute;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
/**
* performs kmeans with incremental update
*/
@Extension(
name = "kMeansIncremental",
namespace = "streamingml",
description = "Performs K-Means clustering on a streaming data set. Data points can be of any dimension and " +
"the dimensionality is calculated from number of parameters. " +
"All data points to be processed by an instance of class Clusterer should be of the same " +
"dimensionality. The Euclidean distance is taken as the distance metric. " +
"The algorithm resembles Sequential K-Means Clustering at " +
"https://www.cs.princeton.edu/courses/archive/fall08/cos436/Duda/C/sk_means.htm ",
parameters = {
@Parameter(
name = "model.name",
description = "The name for the model that is going to be created/reused for prediction",
type = {DataType.STRING}
),
@Parameter(
name = "decay.rate",
description = "this is the decay rate of old data compared to new data. " +
"Value of this will be in [0,1]. 0 means only old data used and" +
"1 will mean that only new data is used",
optional = true,
type = {DataType.DOUBLE},
defaultValue = "0.01f"
),
@Parameter(
name = "no.of.clusters",
description = "The assumed number of natural clusters (numberOfClusters) in the data set.",
type = {DataType.INT}
),
@Parameter(
name = "model.features",
description = "This is a variable length argument. Depending on the dimensionality of data " +
"points we will receive coordinates as features along each axis.",
type = {DataType.DOUBLE, DataType.FLOAT, DataType.INT, DataType.LONG}
)
},
returnAttributes = {
@ReturnAttribute(
name = "euclideanDistanceToClosestCentroid",
description = "Represents the Euclidean distance between the current data point and the " +
"closest centroid.",
type = {DataType.DOUBLE}
),
@ReturnAttribute(
name = "closestCentroidCoordinate",
description = "This is a variable length attribute. Depending on the dimensionality(D) " +
"we will return closestCentroidCoordinate1, closestCentroidCoordinate2,... " +
"closestCentroidCoordinateD which are the d dimensional coordinates of the closest " +
"centroid from the model to the current event. This is the prediction result and " +
"this represents the cluster to which the current event belongs to.",
type = {DataType.DOUBLE}
)
},
examples = {
@Example(
syntax = "define stream InputStream (modelFeature1 double, modelFeature2 double);" +
"from InputStream#streamingML:KMeansIncremental(modelName, numberOfClusters, " +
"modelFeature1, modelFeature2)\"\n" +
"select modelFeature1, modelFeature2, euclideanDistanceToClosestCentroid, " +
"closestCentroidCoordinate1, closestCentroidCoordinate2\"\n" +
"insert into OutputStream",
description = "modelName='model1', numberOfClusters=2, This will select first two " +
"distinct values in " +
"events as initial model and predict and update the model for every event"
),
}
)
public class KMeansIncrementalSPExtension extends StreamProcessor {
private double decayRate;
private LinkedList<DataPoint> dataPointsArray;
private double[] coordinateValuesOfCurrentDataPoint;
private boolean isModelInitialTrained;
private Clusterer clusterer;
private int dimensionality;
private String modelName;
private List<VariableExpressionExecutor> featureVariableExpressionExecutors = new LinkedList<>();
private static final Logger logger = Logger.getLogger(KMeansIncrementalSPExtension.class.getName());
@Override
protected List<Attribute> init(AbstractDefinition abstractDefinition,
ExpressionExecutor[] attributeExpressionExecutors,
ConfigReader configReader, SiddhiAppContext siddhiAppContext) {
dataPointsArray = new LinkedList<>();
//expressionExecutors[0] --> modelName
if (!(attributeExpressionExecutors[0] instanceof ConstantExpressionExecutor)) {
throw new SiddhiAppCreationException("modelName has to be a constant but found " +
this.attributeExpressionExecutors[0].getClass().getCanonicalName());
}
if (attributeExpressionExecutors[0].getReturnType() == Attribute.Type.STRING) {
modelName = (String) ((ConstantExpressionExecutor) attributeExpressionExecutors[0]).getValue();
} else {
throw new SiddhiAppCreationException("modelName should be of type String but found " +
attributeExpressionExecutors[0].getReturnType());
}
//expressionExecutors[1] --> numberOfClusters or decayRate
int numberOfClusters;
int coordinateStartIndex;
if (attributeExpressionExecutors[1].getReturnType() == Attribute.Type.INT) {
if (attributeExpressionExecutors[1] instanceof ConstantExpressionExecutor) {
if (logger.isDebugEnabled()) {
logger.debug("decayRate not specified. using default");
}
decayRate = 0.01;
coordinateStartIndex = 2;
numberOfClusters = (Integer) ((ConstantExpressionExecutor) attributeExpressionExecutors[1]).getValue();
} else {
throw new SiddhiAppCreationException("numberOfClusters has to be a constant but found " +
this.attributeExpressionExecutors[1].getClass().getCanonicalName());
}
} else if (attributeExpressionExecutors[1].getReturnType() == Attribute.Type.DOUBLE) {
if (attributeExpressionExecutors[1] instanceof ConstantExpressionExecutor) {
if (logger.isDebugEnabled()) {
logger.debug("decayRate is specified.");
}
decayRate = (Double) ((ConstantExpressionExecutor) attributeExpressionExecutors[1]).getValue();
if (decayRate < 0 || decayRate > 1) {
throw new SiddhiAppCreationException("decayRate should be in [0,1] but given as " + decayRate);
}
//expressionExecutors[2] --> numberOfClusters
if (!(attributeExpressionExecutors[2] instanceof ConstantExpressionExecutor)) {
throw new SiddhiAppCreationException("numberOfClusters has to be a constant but found " +
this.attributeExpressionExecutors[2].getClass().getCanonicalName());
}
if (attributeExpressionExecutors[2].getReturnType() == Attribute.Type.INT) {
coordinateStartIndex = 3;
numberOfClusters = (Integer) ((ConstantExpressionExecutor)
attributeExpressionExecutors[2]).getValue();
} else {
throw new SiddhiAppCreationException("numberOfClusters should be of type int but found " +
attributeExpressionExecutors[2].getReturnType());
}
} else {
throw new SiddhiAppCreationException("decayRate has to be a constant but found " +
this.attributeExpressionExecutors[1].getClass().getCanonicalName());
}
} else {
throw new SiddhiAppCreationException("The second query parameter should either be decayRate or " +
"numberOfClusters which should be of type double or int respectively but found " +
attributeExpressionExecutors[1].getReturnType());
}
dimensionality = attributeExpressionExecutors.length - coordinateStartIndex;
coordinateValuesOfCurrentDataPoint = new double[dimensionality];
//validating all the features
featureVariableExpressionExecutors = CoreUtils.extractAndValidateFeatures(inputDefinition,
attributeExpressionExecutors, coordinateStartIndex, dimensionality);
String siddhiAppName = siddhiAppContext.getName();
modelName = modelName + "." + siddhiAppName;
if (logger.isDebugEnabled()) {
logger.debug("model name is " + modelName);
}
clusterer = new Clusterer(numberOfClusters, 2, modelName, siddhiAppName, dimensionality);
List<Attribute> attributeList = new ArrayList<>(1 + dimensionality);
attributeList.add(new Attribute("euclideanDistanceToClosestCentroid", Attribute.Type.DOUBLE));
for (int i = 1; i <= dimensionality; i++) {
attributeList.add(new Attribute("closestCentroidCoordinate" + i, Attribute.Type.DOUBLE));
}
return attributeList;
}
@Override
protected void process(ComplexEventChunk<StreamEvent> streamEventChunk, Processor processor,
StreamEventCloner streamEventCloner, ComplexEventPopulater complexEventPopulater) {
synchronized (this) {
while (streamEventChunk.hasNext()) {
StreamEvent streamEvent = streamEventChunk.next();
//validating and getting coordinate values
for (int i = 0; i < dimensionality; i++) {
try {
Number content = (Number) featureVariableExpressionExecutors.get(i).execute(streamEvent);
coordinateValuesOfCurrentDataPoint[i] = content.doubleValue();
} catch (ClassCastException e) {
throw new SiddhiAppCreationException("coordinate values should be int/float/double/long " +
"but found " +
attributeExpressionExecutors[i].execute(streamEvent).getClass());
}
}
//creating a dataPoint with the received coordinate values
DataPoint currentDataPoint = new DataPoint();
currentDataPoint.setCoordinates(coordinateValuesOfCurrentDataPoint);
dataPointsArray.add(currentDataPoint);
//handling the training
clusterer.train(dataPointsArray, 1, decayRate, null);
dataPointsArray.clear();
isModelInitialTrained = clusterer.isModelInitialTrained();
if (isModelInitialTrained) {
complexEventPopulater.populateComplexEvent(streamEvent,
clusterer.getAssociatedCentroidInfo(currentDataPoint));
}
}
}
nextProcessor.process(streamEventChunk);
}
@Override
public void start() {
}
@Override
public void stop() {
KMeansModelHolder.getInstance().deleteKMeansModel(modelName);
}
@Override
public Map<String, Object> currentState() {
synchronized (this) {
Map<String, Object> map = new HashMap();
map.put("untrainedData", dataPointsArray);
map.put("isModelInitialTrained", isModelInitialTrained);
map.put("kMeansModel", KMeansModelHolder.getInstance().getClonedKMeansModel(modelName));
logger.debug("storing kmeans model " + map.get("kMeansModel"));
return map;
}
}
@Override
public void restoreState(Map<String, Object> map) {
synchronized (this) {
dataPointsArray = (LinkedList<DataPoint>) map.get("untrainedData");
isModelInitialTrained = (Boolean) map.get("isModelInitialTrained");
KMeansModel model = (KMeansModel) map.get("kMeansModel");
KMeansModelHolder.getInstance().addKMeansModel(modelName, model);
clusterer.setModel(model);
clusterer.setModelInitialTrained(isModelInitialTrained);
}
}
}