net.maizegenetics.pangenome.api

Class CreateHaplotypeNodeListFromFasta

java.lang.Object

net.maizegenetics.pangenome.api.CreateHaplotypeNodeListFromFasta

public class CreateHaplotypeNodeListFromFasta
extends Object

Simple class to create a haplotype node list from a set of or a single fasta file Created by zrm22 on 8/14/17.

Constructor Summary

Constructors

Constructor and Description
CreateHaplotypeNodeListFromFasta()

Method Summary

Modifier and Type	Method and Description
static List<HaplotypeNode>	createHaplotypeNodeList(String fastaFile, String intervalFile)
static List<HaplotypeNode>	createHaplotypeNodeListFromDirectory(String fastaDir, String intervalFile)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateHaplotypeNodeListFromFasta

public CreateHaplotypeNodeListFromFasta()

Method Detail

createHaplotypeNodeList

public static List<HaplotypeNode> createHaplotypeNodeList(String fastaFile,
                                                          String intervalFile)

createHaplotypeNodeListFromDirectory

public static List<HaplotypeNode> createHaplotypeNodeListFromDirectory(String fastaDir,
                                                                       String intervalFile)