net.maizegenetics.pangenome.api

Class HaplotypeEdge

java.lang.Object

net.maizegenetics.pangenome.api.HaplotypeEdge

public class HaplotypeEdge
extends Object

Author:

Terry Casstevens Created June 19, 2017, Zack Miller, Karl Kremling, Jacob Washburn Class for edges in pratical haplotype graph. Edges contain no sequence data. They simply connect one HaplotypeNode to another and have a probability that the rightHapNode of the current edge is the next HaplotypeNode in the desired path when moving from left to right in the graph.

Constructor Summary

Constructors

Constructor and Description
HaplotypeEdge(HaplotypeNode leftHapNode, HaplotypeNode rightHapNode, double edgeProbability) Constructor

Method Summary

Modifier and Type	Method and Description
double	edgeProbability() Probability that the node to the right of this edge rightHapNode() is the next HaplotypeNode when traversing the graph from left to right.
HaplotypeNode	leftHapNode() HaplotypeNode to the left of the current edge.
HaplotypeNode	rightHapNode() HaplotypeNode to the right of the current edge
String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

HaplotypeEdge

public HaplotypeEdge(HaplotypeNode leftHapNode,
                     HaplotypeNode rightHapNode,
                     double edgeProbability)

Constructor

Parameters:

leftHapNode - left node

rightHapNode - right node

edgeProbability - probability right node is next in sequence starting from left node

Method Detail

leftHapNode

public HaplotypeNode leftHapNode()

HaplotypeNode to the left of the current edge.

rightHapNode

public HaplotypeNode rightHapNode()

HaplotypeNode to the right of the current edge

edgeProbability

public double edgeProbability()

Probability that the node to the right of this edge rightHapNode() is the next HaplotypeNode when traversing the graph from left to right. This value has no biological meaning when traversing from right to left.

toString

public String toString()

Overrides:

toString in class Object