net.maizegenetics.pangenome.api

Class HaplotypeNode.VariantInfo

java.lang.Object

net.maizegenetics.pangenome.api.HaplotypeNode.VariantInfo

Enclosing class:

HaplotypeNode

public class HaplotypeNode.VariantInfo
extends Object

These are instantiated only when requested.

Constructor Summary

Constructors

Constructor and Description
VariantInfo(net.maizegenetics.pangenome.api.HaplotypeNode.VariantInfos infos, int index)

Method Summary

Modifier and Type	Method and Description
String	getAlternate()
String	getChromosome()
int	getEnd()
String	getGenotypeString()
String	getReference()
int	getStart()
boolean	isHet()
boolean	isVariant()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VariantInfo

public VariantInfo(net.maizegenetics.pangenome.api.HaplotypeNode.VariantInfos infos,
                   int index)

Method Detail

getChromosome

public String getChromosome()

getStart

public int getStart()

getEnd

public int getEnd()

getGenotypeString

public String getGenotypeString()

getReference

public String getReference()

getAlternate

public String getAlternate()

isVariant

public boolean isVariant()

isHet

public boolean isHet()