net.maizegenetics.pangenome.api

Class HaplotypePath

java.lang.Object

net.maizegenetics.pangenome.api.HaplotypePath

public class HaplotypePath
extends Object

Created on June 20, 2017

Author:

Terry Casstevens, Karl Kremling

Method Summary

Modifier and Type	Method and Description
List<HaplotypeEdge>	edges() Haplotype Edges that create this HaplotypePath
double	likelihood() Likelihood of haplotype path calculated from all included haplotype nodes
List<HaplotypeNode>	nodes()
String	sequence() Sequence from nodes comprising this path.
String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

edges

public List<HaplotypeEdge> edges()

Haplotype Edges that create this HaplotypePath

nodes

public List<HaplotypeNode> nodes()

likelihood

public double likelihood()

Likelihood of haplotype path calculated from all included haplotype nodes

sequence

public String sequence()

Sequence from nodes comprising this path.

Returns:

Sequence

toString

public String toString()

Overrides:

toString in class Object