net.maizegenetics.pangenome.api

Class ReferenceRangeEmissionProbability.Builder

java.lang.Object

net.maizegenetics.pangenome.api.ReferenceRangeEmissionProbability.Builder

Enclosing class:

ReferenceRangeEmissionProbability

public static class ReferenceRangeEmissionProbability.Builder
extends Object

Constructor Summary

Constructors

Constructor and Description
Builder()

Method Summary

Modifier and Type	Method and Description
ReferenceRangeEmissionProbability.Builder	adjustment(double factor)
ReferenceRangeEmissionProbability	build()
ReferenceRangeEmissionProbability.Builder	exclusionCountMap(Map<Integer,Integer> exclusionCounts)
ReferenceRangeEmissionProbability.Builder	inclusionCountMap(Map<Integer,Integer> inclusionCounts)
ReferenceRangeEmissionProbability.Builder	method(ReferenceRangeEmissionProbability.METHOD emissionMethod)
ReferenceRangeEmissionProbability.Builder	nodeMap(TreeMap<ReferenceRange,List<HaplotypeNode>> nodeMap)
ReferenceRangeEmissionProbability.Builder	probabilityCorrect(double pcorrect)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Builder

public Builder()

Method Detail

nodeMap

public ReferenceRangeEmissionProbability.Builder nodeMap(TreeMap<ReferenceRange,List<HaplotypeNode>> nodeMap)

inclusionCountMap

public ReferenceRangeEmissionProbability.Builder inclusionCountMap(Map<Integer,Integer> inclusionCounts)

exclusionCountMap

public ReferenceRangeEmissionProbability.Builder exclusionCountMap(Map<Integer,Integer> exclusionCounts)

probabilityCorrect

public ReferenceRangeEmissionProbability.Builder probabilityCorrect(double pcorrect)

method

public ReferenceRangeEmissionProbability.Builder method(ReferenceRangeEmissionProbability.METHOD emissionMethod)

adjustment

public ReferenceRangeEmissionProbability.Builder adjustment(double factor)

build

public ReferenceRangeEmissionProbability build()