net.maizegenetics.pangenome.api

Class ReferenceRangeTransitionProbability

java.lang.Object

net.maizegenetics.analysis.imputation.TransitionProbability

net.maizegenetics.pangenome.api.ReferenceRangeTransitionProbability

public class ReferenceRangeTransitionProbability
extends net.maizegenetics.analysis.imputation.TransitionProbability

Constructor Summary

Constructors

Constructor and Description
ReferenceRangeTransitionProbability(ArrayList<List<HaplotypeNode>> anchorNodeList, HaplotypeGraph hapGraph, double minTransitionProb)

Method Summary

Modifier and Type	Method and Description
int	getNumberOfStates()
double	getTransitionProbability(int state1, int state2)
void	setNode(int anchor)

Methods inherited from class net.maizegenetics.analysis.imputation.TransitionProbability

getLnTransitionProbability, setAverageSegmentLength, setPositions, setTransitionCounts, setTransitionProbability

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReferenceRangeTransitionProbability

public ReferenceRangeTransitionProbability(ArrayList<List<HaplotypeNode>> anchorNodeList,
                                           HaplotypeGraph hapGraph,
                                           double minTransitionProb)

Method Detail

setNode

public void setNode(int anchor)

Overrides:

setNode in class net.maizegenetics.analysis.imputation.TransitionProbability

getTransitionProbability

public double getTransitionProbability(int state1,
                                       int state2)

Overrides:

getTransitionProbability in class net.maizegenetics.analysis.imputation.TransitionProbability

getNumberOfStates

public int getNumberOfStates()

Overrides:

getNumberOfStates in class net.maizegenetics.analysis.imputation.TransitionProbability