net.maizegenetics.pangenome.api

Class WriteFastaFromGraphPlugin

java.lang.Object

net.maizegenetics.plugindef.AbstractPlugin

net.maizegenetics.pangenome.api.WriteFastaFromGraphPlugin

All Implemented Interfaces:

Runnable, net.maizegenetics.plugindef.Plugin, net.maizegenetics.plugindef.PluginListener, net.maizegenetics.util.ProgressListener

public class WriteFastaFromGraphPlugin
extends net.maizegenetics.plugindef.AbstractPlugin

Author:

Terry Casstevens Created November 14, 2017

Field Summary

Fields inherited from class net.maizegenetics.plugindef.AbstractPlugin

DEFAULT_CITATION, POSITION_LIST_NONE, TAXA_LIST_NONE

Constructor Summary

Constructors

Constructor and Description
WriteFastaFromGraphPlugin(Frame parentFrame, boolean isInteractive)

Method Summary

Modifier and Type	Method and Description
String	getButtonName()
ImageIcon	getIcon()
String	getToolTipText()
Boolean	includeAnchors() Whether to include anchors
WriteFastaFromGraphPlugin	includeAnchors(Boolean value) Set Include Anchors.
Boolean	includeInnerAnchors() Whether to include inner anchors
WriteFastaFromGraphPlugin	includeInnerAnchors(Boolean value) Set Include Inner Anchors.
String	outputFile() Output filename
WriteFastaFromGraphPlugin	outputFile(String value) Set Output File.
net.maizegenetics.plugindef.DataSet	processData(net.maizegenetics.plugindef.DataSet input)

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin

addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getMenu, getPanel, getParameter, getParameter, getParentFrame, getUsage, getUsageHTML, isInteractive, performFunction, pluginDescription, pluginUserManualURL, progress, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameter, setParameter, setParameters, setParametersToDefault, setThreaded, trace, wasCancelled

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.maizegenetics.plugindef.Plugin

getPluginInstance, getPluginInstance, isPlugin

Constructor Detail

WriteFastaFromGraphPlugin

public WriteFastaFromGraphPlugin(Frame parentFrame,
                                 boolean isInteractive)

Method Detail

processData

public net.maizegenetics.plugindef.DataSet processData(net.maizegenetics.plugindef.DataSet input)

Specified by:

processData in interface net.maizegenetics.plugindef.Plugin

Overrides:

processData in class net.maizegenetics.plugindef.AbstractPlugin

outputFile

public String outputFile()

Output filename

Returns:

Output File

outputFile

public WriteFastaFromGraphPlugin outputFile(String value)

Set Output File. Output filename

Parameters:

value - Output File

Returns:

this plugin

includeAnchors

public Boolean includeAnchors()

Whether to include anchors

Returns:

Include Anchors

includeAnchors

public WriteFastaFromGraphPlugin includeAnchors(Boolean value)

Set Include Anchors. Whether to include anchors

Parameters:

value - Include Anchors

Returns:

this plugin

includeInnerAnchors

public Boolean includeInnerAnchors()

Whether to include inner anchors

Returns:

Include Inner Anchors

includeInnerAnchors

public WriteFastaFromGraphPlugin includeInnerAnchors(Boolean value)

Set Include Inner Anchors. Whether to include inner anchors

Parameters:

value - Include Inner Anchors

Returns:

this plugin

getIcon

public ImageIcon getIcon()

getButtonName

public String getButtonName()

getToolTipText

public String getToolTipText()