Uses of Class
net.maizegenetics.pangenome.api.HaplotypeSequence

Packages that use HaplotypeSequence

Package	Description
net.maizegenetics.pangenome.api

Uses of HaplotypeSequence in net.maizegenetics.pangenome.api

Methods in net.maizegenetics.pangenome.api that return HaplotypeSequence

Modifier and Type	Method and Description
static HaplotypeSequence	HaplotypeSequence.getInstance(String sequence, ReferenceRange referenceRange, double qualityScore, String seqHash) Factory method to create HaplotypeSequence This allows a copy of the HaplotypeSequence to be returned instead of the original mutable object
HaplotypeSequence	HaplotypeNode.haplotypeSequence() HaplotypeSequence object containing the nucleotide sequence and other sequence related information for a given HaplotypeNode object.

Constructors in net.maizegenetics.pangenome.api with parameters of type HaplotypeSequence

Constructor and Description
HaplotypeNode(HaplotypeSequence haplotypeSequence, net.maizegenetics.taxa.TaxaList taxaList)
HaplotypeNode(HaplotypeSequence haplotypeSequence, net.maizegenetics.taxa.TaxaList taxaList, int id)
HaplotypeNode(HaplotypeSequence haplotypeSequence, net.maizegenetics.taxa.TaxaList taxaList, int id, byte[] variantContexts)