Hierarchy For Package net.maizegenetics.pangenome.api

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • net.maizegenetics.plugindef.AbstractPlugin (implements net.maizegenetics.plugindef.Plugin)
    • net.maizegenetics.pangenome.api.FilterGraphPlugin
    • net.maizegenetics.pangenome.api.HaplotypeGraphBuilderPlugin
    • net.maizegenetics.pangenome.api.WriteFastaFromGraphPlugin
  • net.maizegenetics.pangenome.api.CreateGraphUtils
  • net.maizegenetics.pangenome.api.CreateHaplotypeNodeListFromFasta
  • net.maizegenetics.analysis.imputation.EmissionProbability
    • net.maizegenetics.pangenome.api.ReferenceRangeEmissionProbability
  • net.maizegenetics.pangenome.api.GraphIO
  • net.maizegenetics.pangenome.api.GraphUtils
  • net.maizegenetics.pangenome.api.HaplotypeEdge
  • net.maizegenetics.pangenome.api.HaplotypeGraph
  • net.maizegenetics.pangenome.api.HaplotypeNode (implements java.lang.Comparable<T>)
  • net.maizegenetics.pangenome.api.HaplotypeNode.VariantInfo
  • net.maizegenetics.pangenome.api.HaplotypePath
  • net.maizegenetics.pangenome.api.HaplotypeSequence
  • net.maizegenetics.pangenome.api.ReferenceRange (implements java.lang.Comparable<T>)
  • net.maizegenetics.pangenome.api.ReferenceRangeEmissionProbability.Builder
  • net.maizegenetics.analysis.imputation.TransitionProbability
    • net.maizegenetics.pangenome.api.ReferenceRangeTransitionProbability

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • net.maizegenetics.pangenome.api.ReferenceRangeEmissionProbability.METHOD