Uses of Package
net.maizegenetics.pangenome.api

Packages that use net.maizegenetics.pangenome.api

Package	Description
net.maizegenetics.pangenome.api
net.maizegenetics.pangenome.db_loading
net.maizegenetics.pangenome.fastaExtraction
net.maizegenetics.pangenome.gui
net.maizegenetics.pangenome.hapCalling
net.maizegenetics.pangenome.hapcollapse
net.maizegenetics.pangenome.processAssemblyGenomes

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.api

Class and Description
FilterGraphPlugin
HaplotypeEdge
HaplotypeGraph This Class is a wrapper around a complete Practical Haplotype Graph (PHG).
HaplotypeGraphBuilderPlugin
HaplotypeNode
HaplotypeNode.VariantInfo These are instantiated only when requested.
HaplotypePath Created on June 20, 2017
HaplotypeSequence
ReferenceRange
ReferenceRangeEmissionProbability
ReferenceRangeEmissionProbability.Builder
ReferenceRangeEmissionProbability.METHOD
WriteFastaFromGraphPlugin

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.db_loading

Class and Description
HaplotypeNode

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.fastaExtraction

Class and Description
ReferenceRange

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.gui

Class and Description
HaplotypeGraph This Class is a wrapper around a complete Practical Haplotype Graph (PHG).
HaplotypeNode

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.hapCalling

Class and Description
HaplotypeGraph This Class is a wrapper around a complete Practical Haplotype Graph (PHG).
HaplotypeNode
HaplotypePath Created on June 20, 2017
ReferenceRange
ReferenceRangeEmissionProbability.METHOD

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.hapcollapse

Class and Description
HaplotypeGraph This Class is a wrapper around a complete Practical Haplotype Graph (PHG).
HaplotypeNode
ReferenceRange

Classes in net.maizegenetics.pangenome.api used by net.maizegenetics.pangenome.processAssemblyGenomes

Class and Description
ReferenceRange