net.maizegenetics.pangenome.db_loading

Class CreateIntervalsFile

java.lang.Object

net.maizegenetics.pangenome.db_loading.CreateIntervalsFile

public class CreateIntervalsFile
extends Object

This method must be re-worked - getHaplotypeAnchorCoordinates no longer accesses the correct tables. THis method pulls ref chrom, start and end positions for ref anchors. It creates a file that is in the form needed for haplotype caller, ie 8:12921-13181

Author:

lcj34

Constructor Summary

Constructors

Constructor and Description
CreateIntervalsFile()

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args)
static void	processMain(String db, String refLine, String outputFile)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateIntervalsFile

public CreateIntervalsFile()

Method Detail

processMain

public static void processMain(String db,
                               String refLine,
                               String outputFile)

main

public static void main(String[] args)

Parameters:

args -