net.maizegenetics.pangenome.db_loading

Interfaces

• PHGData
• PHGDataWriter

Classes

• AnchorDataPHG
• CloseDBConnectionPlugin
• CreateAnchorFilesFromGeneGFF
• CreateBiggerIntervals
• CreateCSV_TrimmedAnchorLoading
• CreateIntervalBedFilesPlugin
• CreateIntervalsFile
• CreateIntervalsFileFromGffPlugin
• CreatePHGPostgresDockerPlugin
• DBLoadingUtils
• FindTrimmedAnchorCoordinates
• FindTrimmedAssemblyCoordinates
• GeneGFFData
• GenoHaploData
• GetDBConnectionPlugin
• LoadConsensusAnchorSequencesPlugin
• LoadGenomeIntervalsToPHGdbPlugin
• LoadHaplotypeCountsTablePlugin
• LoadHapSequencesFromGVCFPlugin
• LoadHapSequencesToDBPlugin
• PHGdbAccess
• ShellScript_createLoadHaplotypes
• SplitFastaByChromPlugin
• TestPHGStuff

Enums

• DBLoadingUtils.AnchorType
• DBLoadingUtils.MethodType