Hierarchy For Package net.maizegenetics.pangenome.db_loading

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • net.maizegenetics.plugindef.AbstractPlugin (implements net.maizegenetics.plugindef.Plugin)
    • net.maizegenetics.pangenome.db_loading.CloseDBConnectionPlugin
    • net.maizegenetics.pangenome.db_loading.CreateIntervalBedFilesPlugin
    • net.maizegenetics.pangenome.db_loading.CreateIntervalsFileFromGffPlugin
    • net.maizegenetics.pangenome.db_loading.CreatePHGPostgresDockerPlugin
    • net.maizegenetics.pangenome.db_loading.GetDBConnectionPlugin
    • net.maizegenetics.pangenome.db_loading.LoadConsensusAnchorSequencesPlugin
    • net.maizegenetics.pangenome.db_loading.LoadGenomeIntervalsToPHGdbPlugin
    • net.maizegenetics.pangenome.db_loading.LoadHaplotypeCountsTablePlugin
    • net.maizegenetics.pangenome.db_loading.LoadHapSequencesFromGVCFPlugin
    • net.maizegenetics.pangenome.db_loading.LoadHapSequencesToDBPlugin
    • net.maizegenetics.pangenome.db_loading.SplitFastaByChromPlugin
  • net.maizegenetics.pangenome.db_loading.AnchorDataPHG (implements java.lang.Comparable<T>)
  • net.maizegenetics.pangenome.db_loading.CreateAnchorFilesFromGeneGFF
  • net.maizegenetics.pangenome.db_loading.CreateBiggerIntervals
  • net.maizegenetics.pangenome.db_loading.CreateCSV_TrimmedAnchorLoading
  • net.maizegenetics.pangenome.db_loading.CreateIntervalsFile
  • net.maizegenetics.pangenome.db_loading.DBLoadingUtils
  • net.maizegenetics.pangenome.db_loading.FindTrimmedAnchorCoordinates
  • net.maizegenetics.pangenome.db_loading.FindTrimmedAssemblyCoordinates
  • net.maizegenetics.pangenome.db_loading.GeneGFFData (implements java.lang.Comparable<T>)
  • net.maizegenetics.pangenome.db_loading.GenoHaploData
  • net.maizegenetics.pangenome.db_loading.PHGdbAccess (implements java.lang.AutoCloseable, net.maizegenetics.pangenome.db_loading.PHGDataWriter)
  • net.maizegenetics.pangenome.db_loading.ShellScript_createLoadHaplotypes
  • net.maizegenetics.pangenome.db_loading.TestPHGStuff

Interface Hierarchy

• net.maizegenetics.pangenome.db_loading.PHGData
  • net.maizegenetics.pangenome.db_loading.PHGDataWriter

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • net.maizegenetics.pangenome.db_loading.DBLoadingUtils.AnchorType
    • net.maizegenetics.pangenome.db_loading.DBLoadingUtils.MethodType