net.maizegenetics.pangenome.fastaExtraction

Class CreateDBLoadScripts

java.lang.Object

net.maizegenetics.pangenome.fastaExtraction.CreateDBLoadScripts

public class CreateDBLoadScripts
extends Object

Simple Main program to create the script used to load all of the haplotype_caller fastas into the db TODO Refractor the logic and move execution to a plugin Created by zrm22 on 5/12/17.

Constructor Summary

Constructors

Constructor and Description
CreateDBLoadScripts()

Method Summary

Modifier and Type	Method and Description
void	createLoadScript(String listOfFastaFileName, String outputFileName, String pathToDB, String pathToLoadParamFiles, String loadingExportPath, String tempDBBackupDirectory) Method which will create the loading script based on the input files.
static void	main(String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateDBLoadScripts

public CreateDBLoadScripts()

Method Detail

main

public static void main(String[] args)

createLoadScript

public void createLoadScript(String listOfFastaFileName,
                             String outputFileName,
                             String pathToDB,
                             String pathToLoadParamFiles,
                             String loadingExportPath,
                             String tempDBBackupDirectory)

Method which will create the loading script based on the input files. Allows for creation on cbsu with a couple file lists.

Parameters:

listOfFastaFileName -

outputFileName -

pathToDB -

pathToLoadParamFiles -

loadingExportPath -

tempDBBackupDirectory -