Package net.maizegenetics.pangenome.fastaExtraction

Class Summary

Class	Description
CreateDBLoadScripts	Simple Main program to create the script used to load all of the haplotype_caller fastas into the db TODO Refractor the logic and move execution to a plugin Created by zrm22 on 5/12/17.
CreateFastaDBFiles	Simple one off command line tool to create the necessary files to upload fastas to the db.
ExtractFastaFromGVCFCBSU	Command line program to pull the sequence for each taxa where each row is an anchor Multithreads the extraction so it can run quickly TODO Create a plugin which will do this once we recode GVCF->Fasta Created by zrm22 on 5/2/17.
ExtractFastaUtils	Class which holds various utilities for extracting fastas Created by zrm22 on 2/8/18.
GVCFGenotypeSequence	GVCFGenotypeSequence This class should be used instead of GVCFSequence when you want to have diploid calls being returned.
GVCFSequence	GVCFSequence.java