ComputeMedianAnnotation (net.maizegenetics:phg 0.0.1 API)

```
public class ComputeMedianAnnotation
extends Object
```
Simple Utility to Extract Mean, Median and Mode for Depth in a GVCF file Currently supports only DP as defined in the FORMAT Tag. If the value is missing, it will not count anything. For a reference block, it will count the depth for each base pair in the block. For a variant, it will count the depth once. Created by zrm22 on 6/30/17.

Constructors
Constructor and Description
`ComputeMedianAnnotation()`

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static double`	`getMeanDepth(String gvcfFile)` Simple method to compute the mean of the depths.
`static double`	`getMeanDepth(String gvcfFile, String intervalFile)`
`static int`	`getMedianDepth(String gvcfFile)` Simple method to calculate the Median depth for a GVCF file.
`static int`	`getMedianDepth(String gvcfFile, String intervalFile)`
`static int`	`getModeDepth(String gvcfFile)` Simple method to get the mode of the depth.
`static int`	`getModeDepth(String gvcfFile, String intervalFile)`

Constructor Detail
- ComputeMedianAnnotation
```
public ComputeMedianAnnotation()
```

public static double getMeanDepth(String gvcfFile,
                                  String intervalFile)

public static int getModeDepth(String gvcfFile,
                               String intervalFile)

public static int getMedianDepth(String gvcfFile,
                                 String intervalFile)

Class ComputeMedianAnnotation