net.maizegenetics.pangenome.gvcfFiltering

Class SplitVCFIntoIntervalsPlugin

java.lang.Object

net.maizegenetics.plugindef.AbstractPlugin

net.maizegenetics.pangenome.gvcfFiltering.SplitVCFIntoIntervalsPlugin

All Implemented Interfaces:

Runnable, net.maizegenetics.plugindef.Plugin, net.maizegenetics.plugindef.PluginListener, net.maizegenetics.util.ProgressListener

public class SplitVCFIntoIntervalsPlugin
extends net.maizegenetics.plugindef.AbstractPlugin

Author:

Terry Casstevens Created September 15, 2017

Field Summary

Fields inherited from class net.maizegenetics.plugindef.AbstractPlugin

DEFAULT_CITATION, POSITION_LIST_NONE, TAXA_LIST_NONE

Constructor Summary

Constructors

Constructor and Description
SplitVCFIntoIntervalsPlugin(Frame parentFrame, boolean isInteractive)

Method Summary

Modifier and Type	Method and Description
String	getButtonName()
ImageIcon	getIcon()
String	getToolTipText()
String	input() Input VCF file
SplitVCFIntoIntervalsPlugin	input(String value) Set Input.
String	intervalFile() Intervals file
SplitVCFIntoIntervalsPlugin	intervalFile(String value) Set Intervals.
net.maizegenetics.plugindef.DataSet	processData(net.maizegenetics.plugindef.DataSet input)

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin

addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getMenu, getPanel, getParameter, getParameter, getParentFrame, getUsage, getUsageHTML, isInteractive, performFunction, pluginDescription, pluginUserManualURL, progress, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameter, setParameter, setParameters, setParametersToDefault, setThreaded, trace, wasCancelled

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.maizegenetics.plugindef.Plugin

getPluginInstance, getPluginInstance, isPlugin

Constructor Detail

SplitVCFIntoIntervalsPlugin

public SplitVCFIntoIntervalsPlugin(Frame parentFrame,
                                   boolean isInteractive)

Method Detail

processData

public net.maizegenetics.plugindef.DataSet processData(net.maizegenetics.plugindef.DataSet input)

Specified by:

processData in interface net.maizegenetics.plugindef.Plugin

Overrides:

processData in class net.maizegenetics.plugindef.AbstractPlugin

getIcon

public ImageIcon getIcon()

getButtonName

public String getButtonName()

getToolTipText

public String getToolTipText()

input

public String input()

Input VCF file

Returns:

Input

input

public SplitVCFIntoIntervalsPlugin input(String value)

Set Input. Input VCF file

Parameters:

value - Input

Returns:

this plugin

intervalFile

public String intervalFile()

Intervals file

Returns:

Intervals

intervalFile

public SplitVCFIntoIntervalsPlugin intervalFile(String value)

Set Intervals. Intervals file

Parameters:

value - Intervals

Returns:

this plugin