net.maizegenetics.pangenome.hapCalling

Class ImportHaplotypePathFilePlugin

java.lang.Object

net.maizegenetics.plugindef.AbstractPlugin

net.maizegenetics.pangenome.hapCalling.ImportHaplotypePathFilePlugin

All Implemented Interfaces:

Runnable, net.maizegenetics.plugindef.Plugin, net.maizegenetics.plugindef.PluginListener, net.maizegenetics.util.ProgressListener

public class ImportHaplotypePathFilePlugin
extends net.maizegenetics.plugindef.AbstractPlugin

Plugin to import the haplotypePath files produced by ExportHaplotypePathToFilePlugin. User can also provide a list of haplotype ids for a given path. Created by zrm22 on 10/13/17.

Field Summary

Fields inherited from class net.maizegenetics.plugindef.AbstractPlugin

DEFAULT_CITATION, POSITION_LIST_NONE, TAXA_LIST_NONE

Constructor Summary

Constructors

Constructor and Description
ImportHaplotypePathFilePlugin(Frame parentFrame, boolean isInteractive)

Method Summary

Modifier and Type	Method and Description
String	getButtonName()
ImageIcon	getIcon()
String	getToolTipText()
String	inputFileDirectory() Input file directory
ImportHaplotypePathFilePlugin	inputFileDirectory(String value) Set Input File Directory.
net.maizegenetics.plugindef.DataSet	processData(net.maizegenetics.plugindef.DataSet input)

Methods inherited from class net.maizegenetics.plugindef.AbstractPlugin

addListener, cancel, convert, dataSetReturned, getCitation, getInputs, getMenu, getPanel, getParameter, getParameter, getParentFrame, getUsage, getUsageHTML, isInteractive, performFunction, pluginDescription, pluginUserManualURL, progress, progress, receiveInput, reverseTrace, run, setConfigParameters, setParameter, setParameter, setParameter, setParameters, setParametersToDefault, setThreaded, trace, wasCancelled

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.maizegenetics.plugindef.Plugin

getPluginInstance, getPluginInstance, isPlugin

Constructor Detail

ImportHaplotypePathFilePlugin

public ImportHaplotypePathFilePlugin(Frame parentFrame,
                                     boolean isInteractive)

Method Detail

processData

public net.maizegenetics.plugindef.DataSet processData(net.maizegenetics.plugindef.DataSet input)

Specified by:

processData in interface net.maizegenetics.plugindef.Plugin

Overrides:

processData in class net.maizegenetics.plugindef.AbstractPlugin

getIcon

public ImageIcon getIcon()

getButtonName

public String getButtonName()

getToolTipText

public String getToolTipText()

inputFileDirectory

public String inputFileDirectory()

Input file directory

Returns:

Input File Directory

inputFileDirectory

public ImportHaplotypePathFilePlugin inputFileDirectory(String value)

Set Input File Directory. Input file directory

Parameters:

value - Input File Directory

Returns:

this plugin