Uses of Class
net.maizegenetics.pangenome.hapCalling.FastqToHapCountPlugin

Packages that use FastqToHapCountPlugin

Package	Description
net.maizegenetics.pangenome.hapCalling

Uses of FastqToHapCountPlugin in net.maizegenetics.pangenome.hapCalling

Methods in net.maizegenetics.pangenome.hapCalling that return FastqToHapCountPlugin

Modifier and Type	Method and Description
FastqToHapCountPlugin	FastqToHapCountPlugin.configFile(String value) Set ConfigFile Name.
FastqToHapCountPlugin	FastqToHapCountPlugin.debugTaxon(String value) Set Debug Taxon.
FastqToHapCountPlugin	FastqToHapCountPlugin.exportHaplotypeFile(String value) Set Export Haplo File.
FastqToHapCountPlugin	FastqToHapCountPlugin.haplotypesGenomeFile(String value) Set Haplotype File.
FastqToHapCountPlugin	FastqToHapCountPlugin.loadDb(Boolean value) Set LoadDb.
FastqToHapCountPlugin	FastqToHapCountPlugin.method(String value) Set Method.
FastqToHapCountPlugin	FastqToHapCountPlugin.numErrorAllowed(Integer value) Set Allowed Error.
FastqToHapCountPlugin	FastqToHapCountPlugin.readFile(String value) Set Raw Read File.
FastqToHapCountPlugin	FastqToHapCountPlugin.refGenomeFile(String value) Set Haplotype File.
FastqToHapCountPlugin	FastqToHapCountPlugin.taxon(String value) Set Taxon.