net.maizegenetics.pangenome.hapCalling

Classes

• ConvertGBSToSNPs
• ConvertGBSUtils
• ConvertRampSeqTagsToMapPlugin
• ExportHaplotypePathToFilePlugin
• ExportVCForTaxonMethodPlugin
• FastqToHapCountPlugin
• FastqToKmerCountPlugin
• FilterFastqUsingBAMPlugin
• HapCallingUtils
• HapCountBestPathPlugin
• HapCountBestPathToTextPlugin
• ImportHaplotypePathFilePlugin
• IndexHaplotypeKmersPlugin
• PathsToVCFPlugin
• PathToIgraphPlugin
• ScoreRangesByInclusionCountsPlugin