Hierarchy For Package net.maizegenetics.pangenome.hapCalling

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • net.maizegenetics.plugindef.AbstractPlugin (implements net.maizegenetics.plugindef.Plugin)
    • net.maizegenetics.pangenome.hapCalling.ConvertRampSeqTagsToMapPlugin
    • net.maizegenetics.pangenome.hapCalling.ExportHaplotypePathToFilePlugin
    • net.maizegenetics.pangenome.hapCalling.ExportVCForTaxonMethodPlugin
    • net.maizegenetics.pangenome.hapCalling.FastqToHapCountPlugin
    • net.maizegenetics.pangenome.hapCalling.FastqToKmerCountPlugin
    • net.maizegenetics.pangenome.hapCalling.FilterFastqUsingBAMPlugin
    • net.maizegenetics.pangenome.hapCalling.HapCountBestPathPlugin
    • net.maizegenetics.pangenome.hapCalling.HapCountBestPathToTextPlugin
    • net.maizegenetics.pangenome.hapCalling.ImportHaplotypePathFilePlugin
    • net.maizegenetics.pangenome.hapCalling.IndexHaplotypeKmersPlugin
    • net.maizegenetics.pangenome.hapCalling.PathsToVCFPlugin
    • net.maizegenetics.pangenome.hapCalling.PathToIgraphPlugin
    • net.maizegenetics.pangenome.hapCalling.ScoreRangesByInclusionCountsPlugin
  • net.maizegenetics.pangenome.hapCalling.ConvertGBSToSNPs
  • net.maizegenetics.pangenome.hapCalling.ConvertGBSUtils
  • net.maizegenetics.pangenome.hapCalling.HapCallingUtils