Uses of Class
net.maizegenetics.pangenome.hapcollapse.GVCFTyperPlugin

Packages that use GVCFTyperPlugin

Package	Description
net.maizegenetics.pangenome.hapcollapse

Uses of GVCFTyperPlugin in net.maizegenetics.pangenome.hapcollapse

Methods in net.maizegenetics.pangenome.hapcollapse that return GVCFTyperPlugin

Modifier and Type	Method and Description
GVCFTyperPlugin	GVCFTyperPlugin.emitModeParam(GVCFTyperPlugin.EMIT_MODE value) Set Emit_mode.
GVCFTyperPlugin	GVCFTyperPlugin.inputGVCFDir(String value) Set Input GVCF Directory.
GVCFTyperPlugin	GVCFTyperPlugin.inputIntervalFile(String value) Set Input Interval File.
GVCFTyperPlugin	GVCFTyperPlugin.numThreads(Integer value) Set Num Threads.
GVCFTyperPlugin	GVCFTyperPlugin.outputVCFDir(String value) Set Output VCF Directory.
GVCFTyperPlugin	GVCFTyperPlugin.referenceFile(String value) Set Reference Fasta Sequence.