Uses of Package
net.maizegenetics.pangenome.hapcollapse

Packages that use net.maizegenetics.pangenome.hapcollapse

Package	Description
net.maizegenetics.pangenome.hapcollapse

Classes in net.maizegenetics.pangenome.hapcollapse used by net.maizegenetics.pangenome.hapcollapse

Class and Description
FillIndelsIntoConsensus.INDEL_MERGE_RULE
FindHaplotypeClustersPlugin Processes a multi-haplotype VCF file from one region, and identifies haplotype clusters to be collapsed in future steps into a consensus haplotype.
FindHaplotypeClustersPlugin.CLUSTER_METHOD
GVCFTyperPlugin Created by zrm22 on 8/1/17.
GVCFTyperPlugin.EMIT_MODE
MergeGVCFPlugin Created by zrm22 on 11/6/17.
RunHapCollapsePipelinePlugin Simple plugin to run the full Haplotype Collapse plugin.