net.maizegenetics.pangenome.multiSequenceAlignment

Class SplitMafftRun

java.lang.Object

net.maizegenetics.pangenome.multiSequenceAlignment.SplitMafftRun

public class SplitMafftRun
extends Object

Simple utility to create a multithreaded script to run multiple anchors through MAFFT at a single time. This helps when running on cbsu as we can then make use of all the cores. Creates a single master script and a set of subscripts which will all run on a single thread. TODO This should be refractored to be able to run using CMD line calls from java Created by zrm22 on 6/7/17.

Constructor Summary

Constructors

Constructor and Description
SplitMafftRun()

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args)
void	run(String listOfFiles, String numberOfScripts, String outputDirectory)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SplitMafftRun

public SplitMafftRun()

Method Detail

main

public static void main(String[] args)

run

public void run(String listOfFiles,
                String numberOfScripts,
                String outputDirectory)