EvaluateGVCFbyKnownSNPTest (net.maizegenetics:phg 0.0.1 API)

```
public class EvaluateGVCFbyKnownSNPTest
extends Object
```
Create unit test to evaluate GVCF SNPs by comparing to known SNPs. Read a GVCF file from practical haplotype pipeline. Read in known SNP file (VCF). Identify taxa from VCF that corresponds to GVCF taxa. Loop through SNPs from GVCF and compare PHG SNPs to known SNPs. Power: how many of the known SNPs are called in PHG? Type I error: how frequently does PHG differ from known SNPs? Created by edbuckler on 6/22/17.

Constructors
Constructor and Description
`EvaluateGVCFbyKnownSNPTest()`

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`setUp()`
`static void`	`setUpClass()`
`void`	`tearDown()`
`static void`	`tearDownClass()`
`void`	`testPHGvsKnownSNPs()`
`void`	`testSimpleGVCFReader()` Test of writeToHapmap method, of class ExportUtils.

Constructor Detail
- EvaluateGVCFbyKnownSNPTest
```
public EvaluateGVCFbyKnownSNPTest()
```

public static void setUpClass()
                       throws Exception

Class EvaluateGVCFbyKnownSNPTest