| Package | Description |
|---|---|
| net.maizegenetics.pangenome.pipelineTests |
| Class and Description |
|---|
| CompareToKnownSNPPlugin
Plugin to compare A GenotypeTable to a known trusted GenotypeTable
Inputs:
-DataSet of at least 2 GenotypeTables, First one is the known SNP set you wish to compare to, the rest are compared in order.
|
| CountConsensusTaxaAtRefRange
This class counts the number of taxa represented at each genome_interval region
based on the method supplied.
|
| CountNsInRawHapSequencesPlugin
Calculates the percentage of N's for each "raw" haplotype (ie, not consensus)
for each genome interval (anchor, not inter-anchors).
|
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