Uses of Class
net.maizegenetics.pangenome.processAssemblyGenomes.MummerAnalysisMetricsPlugin

Packages that use MummerAnalysisMetricsPlugin

Package	Description
net.maizegenetics.pangenome.processAssemblyGenomes

Uses of MummerAnalysisMetricsPlugin in net.maizegenetics.pangenome.processAssemblyGenomes

Methods in net.maizegenetics.pangenome.processAssemblyGenomes that return MummerAnalysisMetricsPlugin

Modifier and Type	Method and Description
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.asmBZEnd(Integer value) Set BZ Assembly End.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.asmBZStart(Integer value) Set BZ Assembly Start.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.assemblyFasta(String value) Set Assembly Genome File.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.configFile(String value) Set DB Config File.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.coordsFile(String value) Set Mummer Coords File.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.mummerParams(String value) Set Mummer Parameters.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.outputDir(String value) Set Output Directory.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.prefix(String value) Set Output File refix.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.query(String value) Set Query name .
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.refFasta(String value) Set Reference Fasta File.
MummerAnalysisMetricsPlugin	MummerAnalysisMetricsPlugin.target(String value) Set Target name.