| Package | Description |
|---|---|
| net.maizegenetics.pangenome.processAssemblyGenomes |
| Class and Description |
|---|
| AssemblyHaplotypesPlugin
Process Assemblies - both anchor and interanchor.
|
| CreateContigFastaFromAssemblyGenomePlugin
The sequence for each chromosome in the genome fasta file will be split based on
N's.
|
| Mummer4DoonerBZStats
This method takes a coords file, the genome fastas, ranges to be covered
Prints out tab-delimited file of metrics related to the region.
|
| MummerAnalysisMetricsPlugin
This method provides summary statistics on mummer output.
|
| RampSeqContigToGenomeIntervalPlugin
NOTE: this method created to aid Dan Ilut.
|
| ResizeRefBlockPlugin |
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