net.maizegenetics.pangenome.trimAnchors

Class AnchorInfo

java.lang.Object

net.maizegenetics.pangenome.trimAnchors.AnchorInfo

public class AnchorInfo
extends Object

Simple class which holds various information about an anchor. TODO formalize this datastructure Created by zrm22 on 6/8/17.

Constructor Summary

Constructors

Constructor and Description
AnchorInfo(int anchorId, String chrom, int anchorStart, int anchorEnd, int geneStart, int geneEnd)
AnchorInfo(int anchorId, String chrom, int anchorStart, int anchorEnd, int geneStart, int geneEnd, int leftTrimCount, int rightTrimCount)

Method Summary

Modifier and Type	Method and Description
int	anchorEnd()
int	anchorId()
int	anchorStart()
String	chrom()
int	geneEnd()
int	geneStart()
int	leftTrimCount()
int	rightTrimCount()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnchorInfo

public AnchorInfo(int anchorId,
                  String chrom,
                  int anchorStart,
                  int anchorEnd,
                  int geneStart,
                  int geneEnd)

AnchorInfo

public AnchorInfo(int anchorId,
                  String chrom,
                  int anchorStart,
                  int anchorEnd,
                  int geneStart,
                  int geneEnd,
                  int leftTrimCount,
                  int rightTrimCount)

Method Detail

anchorId

public int anchorId()

chrom

public String chrom()

anchorStart

public int anchorStart()

anchorEnd

public int anchorEnd()

geneStart

public int geneStart()

geneEnd

public int geneEnd()

leftTrimCount

public int leftTrimCount()

rightTrimCount

public int rightTrimCount()