001/** 002 * The contents of this file are subject to the Mozilla Public License Version 1.1 003 * (the "License"); you may not use this file except in compliance with the License. 004 * You may obtain a copy of the License at http://www.mozilla.org/MPL/ 005 * Software distributed under the License is distributed on an "AS IS" basis, 006 * WITHOUT WARRANTY OF ANY KIND, either express or implied. See the License for the 007 * specific language governing rights and limitations under the License. 008 * 009 * The Original Code is "Terser.java". Description: 010 * "Wraps a message to provide access to fields using a more terse syntax." 011 * 012 * The Initial Developer of the Original Code is University Health Network. Copyright (C) 013 * 2002. All Rights Reserved. 014 * 015 * Contributor(s): Ryan W. Gross (General Electric Corporation - Healthcare IT). 016 * 017 * Alternatively, the contents of this file may be used under the terms of the 018 * GNU General Public License (the �GPL�), in which case the provisions of the GPL are 019 * applicable instead of those above. If you wish to allow use of your version of this 020 * file only under the terms of the GPL and not to allow others to use your version 021 * of this file under the MPL, indicate your decision by deleting the provisions above 022 * and replace them with the notice and other provisions required by the GPL License. 023 * If you do not delete the provisions above, a recipient may use your version of 024 * this file under either the MPL or the GPL. 025 * 026 */ 027 028package ca.uhn.hl7v2.util; 029 030import ca.uhn.hl7v2.model.*; 031import ca.uhn.hl7v2.HL7Exception; 032import java.util.StringTokenizer; 033 034import org.slf4j.Logger; 035import org.slf4j.LoggerFactory; 036 037/** 038 * <p>Wraps a message to provide access to fields using a terse location 039 * specification syntax. For example: </p> 040 * <p><code>terser.set("MSH-9-3", "ADT_A01");</code> <br> 041 * can be used instead of <br> 042 * <code>message.getMSH().getMessageType().getMessageStructure().setValue("ADT_A01"); </code> </p> 043 * <p>The syntax of a location spec is as follows: </p> 044 * <p>location_spec: <code>segment_path_spec "-" field ["(" rep ")"] ["-" component ["-" subcomponent]] </code></p> 045 * <p>... where rep, field, component, and subcomponent are integers (representing, respectively, 046 * the field repetition (starting at 0), and the field number, component number, and subcomponent 047 * numbers (starting at 1). Omitting the rep is equivalent to specifying 0; omitting the 048 * component or subcomponent is equivalent to specifying 1.</p> 049 * <p>The syntax for the segment_path_spec is as follows: </p> 050 * <p>segment_path_spec: </code> ["/"] (group_spec ["(" rep ")"] "/")* segment_spec ["(" rep ")"]</code></p> 051 * <p> ... where rep has the same meaning as for fields. A leading "/" indicates that navigation to the 052 * location begins at the root of the message; ommitting this indicates that navigation begins at the 053 * current location of the underlying SegmentFinder (see getFinder() -- this allows manual navigation 054 * if desired). The syntax for group_spec is: </p> 055 * <p>group_spec: <code>["."] group_name_pattern</code></p> 056 * <p>Here, a . indicates that the group should be searched for (using a SegmentFinder) starting at the 057 * current location in the message. The wildcards "*" and "?" represent any number of arbitrary characters, 058 * and a single arbitrary character, respectively. For example, "M*" and "?S?" match MSH. The first 059 * group with a name that matches the given group_name_pattern will be matched. </p> 060 * <p>The segment_spec is analogous to the group_spec. </p> 061 * <p>As another example, the following subcomponent in an SIU_S12 message: <p> 062 * <p><code>msg.getSIU_S12_RGSAISNTEAIGNTEAILNTEAIPNTE(1).getSIU_S12_AIGNTE().getAIG().getResourceGroup(1).getIdentifier();</code></p> 063 * </p> ... is referenced by all of the following location_spec: </p> 064 * <p><code>/SIU_S12_RGSAISNTEAIGNTEAILNTEAIPNTE(1)/SIU_S12_AIGNTE/AIG-5(1)-1 <br> 065 * /*AIG*(1)/SIU_S12_AIGNTE/AIG-5(1)-1 <br> 066 * /*AIG*(1)/.AIG-5(1) <code></p> 067 * <p>The search function only iterates through rep 0 of each group. Thus if rep 0 of the first group 068 * in this example was desired instead of rep 1, the following syntax would also work (since there is 069 * only one AIG segment position in SUI_S12): </p> 070 * <p><code>/.AIG-5(1)</code></p> 071 * 072 * @author Bryan Tripp 073 * @author Ryan W. Gross (General Electric Corporation - Healthcare IT). 074 */ 075public class Terser { 076 077 private SegmentFinder finder; 078 private static Logger log = LoggerFactory.getLogger(Terser.class); 079 080 /** Creates a new instance of Terser */ 081 public Terser(Message message) { 082 finder = new SegmentFinder(message); 083 } 084 085 /** 086 * Returns the string value of the Primitive at the given location. 087 * @param segment the segment from which to get the primitive 088 * @param field the field number (indexed from 1) 089 * @param rep the field repetition (indexed from 0) 090 * @param component the component number (indexed from 1, use 1 for primitive field) 091 * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) 092 */ 093 public static String get(Segment segment, int field, int rep, int component, int subcomponent) throws HL7Exception { 094 if (segment == null) { 095 throw new NullPointerException("segment may not be null"); 096 } 097 if (rep < 0) { 098 throw new IllegalArgumentException("rep must not be negative"); 099 } 100 if (component < 1) { 101 throw new IllegalArgumentException("component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 102 } 103 if (subcomponent < 1) { 104 throw new IllegalArgumentException("subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 105 } 106 107 Primitive prim = getPrimitive(segment, field, rep, component, subcomponent); 108 return prim.getValue(); 109 } 110 111 /** 112 * Sets the string value of the Primitive at the given location. 113 * @param segment the segment from which to get the primitive 114 * @param field the field number (indexed from 1) 115 * @param rep the field repetition (indexed from 0) 116 * @param component the component number (indexed from 1, use 1 for primitive field) 117 * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) 118 */ 119 public static void set(Segment segment, int field, int rep, int component, int subcomponent, String value) throws HL7Exception { 120 if (segment == null) { 121 throw new NullPointerException("segment may not be null"); 122 } 123 if (rep < 0) { 124 throw new IllegalArgumentException("rep must not be negative"); 125 } 126 if (component < 1) { 127 throw new IllegalArgumentException("component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 128 } 129 if (subcomponent < 1) { 130 throw new IllegalArgumentException("subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 131 } 132 133 Primitive prim = getPrimitive(segment, field, rep, component, subcomponent); 134 prim.setValue(value); 135 } 136 137 /** 138 * Returns the Primitive object at the given location. 139 */ 140 private static Primitive getPrimitive(Segment segment, int field, int rep, int component, int subcomponent) throws HL7Exception { 141 Type type = segment.getField(field, rep); 142 return getPrimitive(type, component, subcomponent); 143 } 144 145 146 /** 147 * Returns the Primitive object at the given location in the given field. 148 * It is intended that the given type be at the field level, although extra components 149 * will be added blindly if, for example, you provide a primitive subcomponent instead 150 * and specify component or subcomponent > 1 151 * @param type the type from which to get the primitive 152 * @param component the component number (indexed from 1, use 1 for primitive field) 153 * @param subcomponent the subcomponent number (indexed from 1, use 1 for primitive component) 154 */ 155 public static Primitive getPrimitive(final Type type, final int component, final int subcomponent) { 156 if (type == null) { 157 throw new NullPointerException("type may not be null"); 158 } 159 if (component < 1) { 160 throw new IllegalArgumentException("component must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 161 } 162 if (subcomponent < 1) { 163 throw new IllegalArgumentException("subcomponent must not be 1 or more (note that this parameter is 1-indexed, not 0-indexed)"); 164 } 165 166 167 Type comp = getComponent(type, component); 168 if(type instanceof Varies && comp instanceof GenericPrimitive && subcomponent > 1) { 169 try { 170 final Varies varies = (Varies)type; 171 final GenericComposite comp2 = new GenericComposite(type.getMessage()); 172 varies.setData(comp2); 173 comp = getComponent(type, component); 174 } catch (final DataTypeException de) { 175 final String message = "Unexpected exception copying data to generic composite. This is probably a bug within HAPI. " + de.getMessage(); 176 log.error(message, de); 177 throw new Error(message); 178 } 179 } 180 final Type sub = getComponent(comp, subcomponent); 181 return getPrimitive(sub); 182 } 183 184 185 /** 186 * Attempts to extract a Primitive from the given type. If it's a composite, 187 * drills down through first components until a primitive is reached. 188 */ 189 private static Primitive getPrimitive(Type type) { 190 Primitive p = null; 191 if (Varies.class.isAssignableFrom(type.getClass())) { 192 p = getPrimitive(((Varies) type).getData()); 193 } else if (Composite.class.isAssignableFrom(type.getClass())) { 194 try { 195 p = getPrimitive(((Composite) type).getComponent(0)); 196 } catch (HL7Exception e) { 197 throw new Error("Internal error: HL7Exception thrown on Composite.getComponent(0)."); 198 } 199 } else if (type instanceof Primitive) { 200 p = (Primitive) type; 201 } 202 return p; 203 } 204 205 /** 206 * Returns the component (or sub-component, as the case may be) at the given 207 * index. If it does not exist, it is added as an "extra component". 208 * If comp > 1 is requested from a Varies with GenericPrimitive data, the 209 * data is set to GenericComposite (this avoids the creation of a chain of 210 * ExtraComponents on GenericPrimitives). 211 * Components are numbered from 1. 212 */ 213 private static Type getComponent(Type type, int comp) { 214 Type ret = null; 215 if (Varies.class.isAssignableFrom(type.getClass())) { 216 Varies v = (Varies) type; 217 218 try { 219 if (comp > 1 && GenericPrimitive.class.isAssignableFrom(v.getData().getClass())) 220 v.setData(new GenericComposite(v.getMessage())); 221 } catch (DataTypeException de) { 222 String message = "Unexpected exception copying data to generic composite: " + de.getMessage(); 223 log.error(message, de); 224 throw new Error(message); 225 } 226 227 ret = getComponent(v.getData(), comp); 228 } else { 229 if (Primitive.class.isAssignableFrom(type.getClass()) && comp == 1) { 230 ret = type; 231 } else if (GenericComposite.class.isAssignableFrom(type.getClass()) 232 || (Composite.class.isAssignableFrom(type.getClass()) && comp <= numStandardComponents(type))) { 233 //note that GenericComposite can return components > number of standard components 234 235 try { 236 ret = ((Composite) type).getComponent(comp - 1); 237 } catch (Exception e) { 238 throw new Error("Internal error: HL7Exception thrown on getComponent(x) where x < # standard components.", e); 239 } 240 } else { 241 ret = type.getExtraComponents().getComponent(comp - numStandardComponents(type) - 1); 242 } 243 } 244 return ret; 245 } 246 247 /** 248 * <p>Gets the string value of the field specified. See the class docs for syntax 249 * of the location spec. </p> 250 * <p>If a repetition is omitted for a repeating segment or field, the first rep is used. 251 * If the component or subcomponent is not specified for a composite field, the first 252 * component is used (this allows one to write code that will work with later versions of 253 * the HL7 standard). 254 */ 255 public String get(String spec) throws HL7Exception { 256 StringTokenizer tok = new StringTokenizer(spec, "-", false); 257 Segment segment = getSegment(tok.nextToken()); 258 259 int[] ind = getIndices(spec); 260 return get(segment, ind[0], ind[1], ind[2], ind[3]); 261 } 262 263 /** 264 * Returns the segment specified in the given segment_path_spec. 265 */ 266 public Segment getSegment(String segSpec) throws HL7Exception { 267 Segment seg = null; 268 269 if (segSpec.substring(0, 1).equals("/")) { 270 getFinder().reset(); 271 } 272 273 StringTokenizer tok = new StringTokenizer(segSpec, "/", false); 274 SegmentFinder finder = getFinder(); 275 while(tok.hasMoreTokens()) { 276 String pathSpec = tok.nextToken(); 277 Terser.PathSpec ps = parsePathSpec(pathSpec); 278 if (tok.hasMoreTokens()) { 279 ps.isGroup = true; 280 } else { 281 ps.isGroup = false; 282 } 283 284 if (ps.isGroup) { 285 Group g = null; 286 if (ps.find) { 287 g = finder.findGroup(ps.pattern, ps.rep); 288 } else { 289 g = finder.getGroup(ps.pattern, ps.rep); 290 } 291 finder = new SegmentFinder(g); 292 } else { 293 if (ps.find) { 294 seg = finder.findSegment(ps.pattern, ps.rep); 295 } else { 296 seg = finder.getSegment(ps.pattern, ps.rep); 297 } 298 } 299 } 300 301 return seg; 302 } 303 304 /** Gets path information from a path spec. */ 305 private PathSpec parsePathSpec(String spec) throws HL7Exception { 306 PathSpec ps = new PathSpec(); 307 308 if (spec.startsWith(".")) { 309 ps.find = true; 310 spec = spec.substring(1); 311 } else { 312 ps.find = false; 313 } 314 315 if (spec.length() == 0) { 316 throw new HL7Exception("Invalid path (some path element is either empty or contains only a dot)"); 317 } 318 StringTokenizer tok = new StringTokenizer(spec, "()", false); 319 ps.pattern = tok.nextToken(); 320 if (tok.hasMoreTokens()) { 321 String repString = tok.nextToken(); 322 try { 323 ps.rep = Integer.parseInt(repString); 324 } catch (NumberFormatException e) { 325 throw new HL7Exception(repString + " is not a valid rep #", HL7Exception.APPLICATION_INTERNAL_ERROR); 326 } 327 } else { 328 ps.rep = 0; 329 } 330 return ps; 331 } 332 333 /** 334 * Given a Terser path, returns an array containing field num, field rep, 335 * component, and subcomponent. 336 */ 337 public static int[] getIndices(String spec) throws HL7Exception { 338 StringTokenizer tok = new StringTokenizer(spec, "-", false); 339 tok.nextToken(); //skip over segment 340 if (!tok.hasMoreTokens()) 341 throw new HL7Exception("Must specify field in spec " + spec, HL7Exception.APPLICATION_INTERNAL_ERROR); 342 343 int[] ret = null; 344 try { 345 StringTokenizer fieldSpec = new StringTokenizer(tok.nextToken(), "()", false); 346 int fieldNum = Integer.parseInt(fieldSpec.nextToken()); 347 int fieldRep = 0; 348 if (fieldSpec.hasMoreTokens()) { 349 fieldRep = Integer.parseInt(fieldSpec.nextToken()); 350 } 351 352 int component = 1; 353 if (tok.hasMoreTokens()) { 354 component = Integer.parseInt(tok.nextToken()); 355 } 356 357 int subcomponent = 1; 358 if (tok.hasMoreTokens()) { 359 subcomponent = Integer.parseInt(tok.nextToken()); 360 } 361 int[] result = {fieldNum, fieldRep, component, subcomponent}; 362 ret = result; 363 } catch (NumberFormatException e) { 364 throw new HL7Exception("Invalid integer in spec " + spec, HL7Exception.APPLICATION_INTERNAL_ERROR); 365 } 366 367 return ret; 368 } 369 370 /** 371 * Sets the string value of the field specified. See class docs for location spec syntax. 372 */ 373 public void set(String spec, String value) throws HL7Exception { 374 StringTokenizer tok = new StringTokenizer(spec, "-", false); 375 Segment segment = getSegment(tok.nextToken()); 376 377 int[] ind = getIndices(spec); 378 log.debug("Setting {} seg: {} ind: {} {} {} {}", 379 new Object[] {spec, segment.getName(), ind[0], ind[1], ind[2], ind[3]}); 380 set(segment, ind[0], ind[1], ind[2], ind[3], value); 381 } 382 383 /** 384 * Returns the number of components in the given field, i.e. the 385 * number of standard components (e.g. 6 for CE) plus any extra components that 386 * have been added at runtime. This may vary by repetition, as different reps 387 * may have different extra components. 388 */ 389 /*public static int numComponents(Type field) throws HL7Exception { 390 return numComponents(seg.getField(field, rep)); 391 }*/ 392 393 /** 394 * Returns the number of sub-components in the specified component, i.e. 395 * the number of standard sub-components (e.g. 6 for CE) plus any extra components that 396 * that have been added at runtime. 397 * @param component numbered from 1 398 */ 399 public static int numSubComponents(Type type, int component) { 400 int n = -1; 401 if (component == 1 && Primitive.class.isAssignableFrom(type.getClass())) { 402 //note that getComponent(primitive, 1) below returns the primitive 403 //itself -- if we do numComponents on it, we'll end up with the 404 //number of components in the field, not the number of subcomponents 405 n = 1; 406 } else { 407 Type comp = getComponent(type, component); 408 n = numComponents(comp); 409 } 410 return n; 411 /* 412 //Type t = seg.getField(field, rep); 413 if (Varies.class.isAssignableFrom(type.getClass())) { 414 return numSubComponents(((Varies) type).getData(), component); 415 } else if (Primitive.class.isAssignableFrom(type.getClass()) && component == 1) { 416 n = 1; 417 } else if (Composite.class.isAssignableFrom(type.getClass()) && component <= numStandardComponents(t)) { 418 n = numComponents(((Composite) type).getComponent(component - 1)); 419 } else { //we're being asked about subcomponents of an extra component 420 n = numComponents(t.getExtraComponents().getComponent(component - numStandardComponents(t) - 1)); 421 } 422 return n; 423 */ 424 } 425 426 /** 427 * Returns the number of components in the given type, i.e. the 428 * number of standard components (e.g. 6 for CE) plus any extra components that 429 * have been added at runtime. 430 */ 431 public static int numComponents(Type type) { 432 if (Varies.class.isAssignableFrom(type.getClass())) { 433 return numComponents(((Varies) type).getData()); 434 } else { 435 return numStandardComponents(type) + type.getExtraComponents().numComponents(); 436 } 437 } 438 439 private static int numStandardComponents(Type t) { 440 int n = 0; 441 if (Varies.class.isAssignableFrom(t.getClass())) { 442 n = numStandardComponents(((Varies) t).getData()); 443 } else if (Composite.class.isAssignableFrom(t.getClass())) { 444 n = ((Composite) t).getComponents().length; 445 } else { 446 n = 1; 447 } 448 return n; 449 } 450 451 /** 452 * Returns the segment finder used by this Terser. Navigating the 453 * finder will influence the behaviour of the Terser accordingly. Ie 454 * when the full path of the segment is not specified the segment will 455 * be sought beginning at the current location of the finder. 456 */ 457 public SegmentFinder getFinder() { 458 return finder; 459 } 460 461 /** Struct for information about a step in a segment path. */ 462 private class PathSpec { 463 public String pattern; 464 public boolean isGroup; 465 public boolean find; 466 public int rep; 467 } 468}