4.0.0 au.csiro.aehrc.variant-spark variant-spark_2.11 0.2.0 jar variant-spark Genomic variants interpretation toolkit http://bioinformatics.csiro.au/variantspark CSIRO Non-Commercial Source Code Licence Agreement v1.0 https://raw.githubusercontent.com/aehrc/VariantSpark/master/LICENSE 2014 Denis Bauer denis.bauer@csiro.au CSIRO eHealth https://aehrc.com Piotr Szul piotr.szul@data61.csiro.au CSIRO Data61 http://www.data61.csiro.au/ Aidan O’Brien aidan.o’brien@csiro.au CSIRO eHealth https://aehrc.com Oscar Luo Oscar.luo@csiro.au CSIRO eHealth https://aehrc.com Robert Dunne Rob.Dunne@data61.csiro.au CSIRO eHealth http://www.data61.csiro.au/ scm:git:git://github.com/aehrc/VariantSpark.git scm:git:ssh://github.com:aehrc/VariantSpark.git https://github.com/aehrc/VariantSpark ossrh https://oss.sonatype.org/content/repositories/snapshots 1.8 1.8 UTF-8 2.11 2.11.8 2.2.1 false ossrh https://oss.sonatype.org/content/repositories/snapshots true always org.scala-lang scala-library ${scala.version} provided org.apache.spark spark-core_${scala.binary.version} ${spark.version} provided org.tachyonproject * org.apache.spark spark-mllib_${scala.binary.version} ${spark.version} provided org.scala-graph graph-core_${scala.binary.version} 1.12.3 org.json4s json4s-ext_${scala.binary.version} 3.2.11 junit junit 4.12 test it.unimi.dsi fastutil 7.0.8 com.github.tototoshi scala-csv_${scala.binary.version} 1.2.2 com.github.samtools htsjdk 2.5.1 joda-time joda-time 2.7 args4j args4j 2.0.29 it.unimi.dsi dsiutils 2.3.3 ch.qos.logback logback-classic com.google.guava guava org.scala-saddle saddle-core_${scala.binary.version} 1.3.4 test au.csiro.aehrc.third.hail-is hail 0.1-SNAPSHOT provided org.easymock easymock 3.5.1 test org.ow2.asm asm 5.1 provided org.ow2.asm asm-util 5.1 provided org.ow2.asm asm-analysis 5.1 provided net.alchim31.maven scala-maven-plugin 3.2.2 add-scala-source add-source scala-compile-first process-resources compile scala-test-compile process-test-resources testCompile attach-scaladocs verify doc-jar ${scala.version} org.apache.maven.plugins maven-surefire-plugin 2.20 ${skipTests} false true !test/**/*Test org.apache.maven.plugins maven-shade-plugin 2.3 package shade true all *:* META-INF/*.SF META-INF/*.DSA META-INF/*.RSA org.apache.maven.plugins maven-compiler-plugin 2.3.2 1.8 1.8 org.sonatype.plugins nexus-staging-maven-plugin 1.6.8 true ossrh https://oss.sonatype.org/ ${sonata.autorelease} org.eclipse.m2e lifecycle-mapping 1.0.0 net.alchim31.maven scala-maven-plugin [3.2.2,) compile testCompile add-source release false org.apache.maven.plugins maven-source-plugin 3.0.1 attach-sources jar-no-fork true org.apache.maven.plugins maven-javadoc-plugin 2.9.1 attach-javadocs jar org.apache.maven.plugins maven-gpg-plugin 1.5 sign-artifacts verify sign org.apache.maven.plugins maven-release-plugin 2.5.3 true false release deploy scala_2.10 false 2.10 2.10.6 cdh5.8.2 false cloudera https://repository.cloudera.com/artifactory/cloudera-repos/ 1.6.0-cdh5.8.2 org.xerial.snappy snappy-java 1.1.2.6 provided cdh5.9.0 false cloudera https://repository.cloudera.com/artifactory/cloudera-repos/ 1.6.0-cdh5.9.0 org.xerial.snappy snappy-java 1.1.2.6 provided no-perf true org.apache.maven.plugins maven-surefire-plugin 2.20 ${skipTests} false true **/*PerfTest regression-test false org.apache.maven.plugins maven-surefire-plugin 2.20 regression test/regression/*Test test test