4.0.0 au.csiro.aehrc.variant-spark variant-spark_2.11 0.5.0-a0-dev4 jar variant-spark Genomic variants interpretation toolkit http://bioinformatics.csiro.au/variantspark CSIRO Non-Commercial Source Code Licence Agreement v1.0 https://raw.githubusercontent.com/aehrc/VariantSpark/master/LICENSE 2014 Denis Bauer denis.bauer@csiro.au CSIRO eHealth https://aehrc.com Piotr Szul piotr.szul@data61.csiro.au CSIRO Data61 http://www.data61.csiro.au/ Aidan O’Brien aidan.o’brien@csiro.au CSIRO eHealth https://aehrc.com Oscar Luo Oscar.luo@csiro.au CSIRO eHealth https://aehrc.com Robert Dunne Rob.Dunne@data61.csiro.au CSIRO eHealth http://www.data61.csiro.au/ scm:git:git://github.com/aehrc/VariantSpark.git scm:git:ssh://github.com:aehrc/VariantSpark.git https://github.com/aehrc/VariantSpark ossrh https://oss.sonatype.org/content/repositories/snapshots 1.8 1.8 1.8 UTF-8 2.12 2.12.14 3.1.2 3.1 --test false true false false 1g 0.2.74 false devel ossrh https://oss.sonatype.org/content/repositories/snapshots true always org.scala-lang scala-library ${scala.version} provided org.apache.spark spark-core_${scala.binary.version} ${spark.version} provided org.tachyonproject * org.apache.spark spark-mllib_${scala.binary.version} ${spark.version} provided org.scala-graph graph-core_${scala.binary.version} 1.12.3 junit junit 4.13.1 test it.unimi.dsi fastutil 7.0.8 com.github.tototoshi scala-csv_${scala.binary.version} 1.3.8 com.github.samtools htsjdk 2.21.0 joda-time joda-time 2.7 args4j args4j 2.0.29 org.json4s json4s-ext_${scala.binary.version} 3.5.3 it.unimi.dsi dsiutils 2.3.3 ch.qos.logback logback-classic com.google.guava guava org.easymock easymock 3.5.1 test org.ow2.asm asm 5.1 provided org.ow2.asm asm-util 5.1 provided org.ow2.asm asm-analysis 5.1 provided au.csiro.aehrc.third.hail-is hail_${scala.binary.version}_${spark.binary.version} ${hail.version}-SNAPSHOT provided au.csiro.aehrc.third.hail-is hail_${scala.binary.version}_${spark.binary.version} ${hail.version}-SNAPSHOT all test org.apache.commons commons-csv 1.9.0 test pl.project13.maven git-commit-id-plugin 4.0.3 get-the-git-infos revision initialize true ${project.build.outputDirectory}/variant-spark.git.properties full net.alchim31.maven scala-maven-plugin 4.4.0 add-scala-source add-source scala-compile-first process-resources compile scala-test-compile process-test-resources testCompile attach-scaladocs verify doc-jar ${scala.version} true true incremental true -unchecked -feature -explaintypes -target:jvm-1.8 -language:implicitConversions -Xms1024m -Xmx1024m -XX:ReservedCodeCacheSize=${CodeCacheSize} -source ${java.version} -target ${java.version} -Xlint:all,-serial,-path,-try org.apache.maven.plugins maven-surefire-plugin 2.20 ${skipTests} false true !test/**/*Test org.apache.maven.plugins maven-shade-plugin 2.3 package shade true all *:* META-INF/*.SF META-INF/*.DSA META-INF/*.RSA it.unimi.dsi.fastutil it.shaded.dsi.fastutil org.apache.maven.plugins maven-compiler-plugin 2.3.2 1.8 1.8 org.antipathy mvn-scalafmt_${scala.binary.version} 1.0.3 ${scalafmt.skip} ${scalafmt.skip} ${project.basedir}/.scalafmt.conf ${scalafmt.onlyChangedFiles} ${scalafmt.validateOnly} validate format org.scalastyle scalastyle-maven-plugin 1.0.0 false true false false ${basedir}/src/main/scala ${basedir}/src/test/scala scalastyle-config.xml ${basedir}/target/scalastyle-output.xml UTF-8 validate check org.eclipse.m2e lifecycle-mapping 1.0.0 net.alchim31.maven scala-maven-plugin [3.2.2,) compile testCompile add-source release false org.apache.maven.plugins maven-source-plugin 3.0.1 attach-sources jar-no-fork true org.apache.maven.plugins maven-gpg-plugin 3.0.1 sign-artifacts sign org.apache.maven.plugins maven-deploy-plugin true org.sonatype.plugins nexus-staging-maven-plugin 1.6.13 true ossrh https://oss.sonatype.org/ ${sonata.autorelease} scala_2.10 false 2.10 2.10.6 cdh5.8.2 false cloudera https://repository.cloudera.com/artifactory/cloudera-repos/ 1.6.0-cdh5.8.2 org.xerial.snappy snappy-java 1.1.2.6 provided cdh5.9.0 false cloudera https://repository.cloudera.com/artifactory/cloudera-repos/ 1.6.0-cdh5.9.0 org.xerial.snappy snappy-java 1.1.2.6 provided no-perf true org.apache.maven.plugins maven-surefire-plugin 2.20 ${skipTests} false true **/*PerfTest slow-test false org.apache.maven.plugins maven-surefire-plugin 2.20 slow test/stats/*Test test test regression-test false build.type release org.apache.maven.plugins maven-surefire-plugin 2.20 regression test/regression/*Test test test