public static class Sequence.SequenceReferenceSeqComponent extends BackboneElement implements org.hl7.fhir.instance.model.api.IBaseBackboneElement
| Modifier and Type | Field and Description |
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protected CodeableConcept |
chromosome
The chromosome containing the genetic finding.
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protected StringType |
genomeBuild
The Genome Build used for reference, following GRCh build versions e.g.
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protected CodeableConcept |
referenceSeqId
Reference identifier of reference sequence submitted to NCBI.
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protected Reference |
referenceSeqPointer
A Pointer to another Sequence entity as refence sequence.
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protected Sequence |
referenceSeqPointerTarget
The actual object that is the target of the reference (A Pointer to another Sequence entity as refence sequence.)
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protected StringType |
referenceSeqString
A Reference Sequence string.
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protected IntegerType |
windowEnd
0-based end position (exclusive) of the window on the reference sequence.
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protected IntegerType |
windowStart
0-based start position (inclusive) of the window on the reference sequence.
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modifierExtension| Constructor and Description |
|---|
SequenceReferenceSeqComponent()
Constructor
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SequenceReferenceSeqComponent(CodeableConcept referenceSeqId,
IntegerType windowStart,
IntegerType windowEnd)
Constructor
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addModifierExtension, addModifierExtension, copyValues, getModifierExtension, hasModifierExtensionaddExtension, addExtension, copyValues, getExtension, getExtensionsByUrl, getExtensionString, getId, getIdElement, hasExtension, hasExtension, hasId, hasIdElement, setId, setIdElementcastToActionDefinition, castToAddress, castToAnnotation, castToAttachment, castToBase64Binary, castToBoolean, castToCode, castToCodeableConcept, castToCoding, castToContactPoint, castToDataRequirement, castToDate, castToDateTime, castToDecimal, castToDuration, castToElementDefinition, castToExtension, castToHumanName, castToId, castToIdentifier, castToInstant, castToInteger, castToMarkdown, castToMeta, castToModuleMetadata, castToMoney, castToNarrative, castToOid, castToParameterDefinition, castToPeriod, castToPositiveInt, castToQuantity, castToRange, castToRatio, castToReference, castToResource, castToSampledData, castToSignature, castToSimpleQuantity, castToString, castToTime, castToTiming, castToTriggerDefinition, castToUnsignedInt, castToUri, children, compareDeep, compareDeep, compareDeep, compareValues, compareValues, equals, getChildByName, getFormatCommentsPost, getFormatCommentsPre, getUserData, getUserInt, getUserString, hasFormatComment, hasPrimitiveValue, hasType, hasUserData, isMetadataBased, isPrimitive, listChildrenByName, listChildrenByName, primitiveValue, setUserData, setUserDataINNclone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitgetFormatCommentsPost, getFormatCommentsPre, hasFormatCommentprotected CodeableConcept chromosome
protected StringType genomeBuild
protected CodeableConcept referenceSeqId
protected Reference referenceSeqPointer
protected Sequence referenceSeqPointerTarget
protected StringType referenceSeqString
protected IntegerType windowStart
protected IntegerType windowEnd
public SequenceReferenceSeqComponent()
public SequenceReferenceSeqComponent(CodeableConcept referenceSeqId, IntegerType windowStart, IntegerType windowEnd)
public CodeableConcept getChromosome()
chromosome (The chromosome containing the genetic finding. The value set will be 1-22, X, Y when the species is human without chromosome abnormality. Otherwise, NCBI-Gene code system should be used.)public boolean hasChromosome()
public Sequence.SequenceReferenceSeqComponent setChromosome(CodeableConcept value)
value - chromosome (The chromosome containing the genetic finding. The value set will be 1-22, X, Y when the species is human without chromosome abnormality. Otherwise, NCBI-Gene code system should be used.)public StringType getGenomeBuildElement()
genomeBuild (The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.). This is the underlying object with id, value and extensions. The accessor "getGenomeBuild" gives direct access to the valuepublic boolean hasGenomeBuildElement()
public boolean hasGenomeBuild()
public Sequence.SequenceReferenceSeqComponent setGenomeBuildElement(StringType value)
value - genomeBuild (The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.). This is the underlying object with id, value and extensions. The accessor "getGenomeBuild" gives direct access to the valuepublic String getGenomeBuild()
public Sequence.SequenceReferenceSeqComponent setGenomeBuild(String value)
value - The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used.public CodeableConcept getReferenceSeqId()
referenceSeqId (Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.)public boolean hasReferenceSeqId()
public Sequence.SequenceReferenceSeqComponent setReferenceSeqId(CodeableConcept value)
value - referenceSeqId (Reference identifier of reference sequence submitted to NCBI. It must match the type in the Sequence.type field. For example, the prefix, “NG_” identifies reference sequence for genes, “NM_” for messenger RNA transcripts, and “NP_” for amino acid sequences.)public Reference getReferenceSeqPointer()
referenceSeqPointer (A Pointer to another Sequence entity as refence sequence.)public boolean hasReferenceSeqPointer()
public Sequence.SequenceReferenceSeqComponent setReferenceSeqPointer(Reference value)
value - referenceSeqPointer (A Pointer to another Sequence entity as refence sequence.)public Sequence getReferenceSeqPointerTarget()
referenceSeqPointer The actual object that is the target of the reference. The reference library doesn't populate this, but you can use it to hold the resource if you resolve it. (A Pointer to another Sequence entity as refence sequence.)public Sequence.SequenceReferenceSeqComponent setReferenceSeqPointerTarget(Sequence value)
value - referenceSeqPointer The actual object that is the target of the reference. The reference library doesn't use these, but you can use it to hold the resource if you resolve it. (A Pointer to another Sequence entity as refence sequence.)public StringType getReferenceSeqStringElement()
referenceSeqString (A Reference Sequence string.). This is the underlying object with id, value and extensions. The accessor "getReferenceSeqString" gives direct access to the valuepublic boolean hasReferenceSeqStringElement()
public boolean hasReferenceSeqString()
public Sequence.SequenceReferenceSeqComponent setReferenceSeqStringElement(StringType value)
value - referenceSeqString (A Reference Sequence string.). This is the underlying object with id, value and extensions. The accessor "getReferenceSeqString" gives direct access to the valuepublic String getReferenceSeqString()
public Sequence.SequenceReferenceSeqComponent setReferenceSeqString(String value)
value - A Reference Sequence string.public IntegerType getWindowStartElement()
windowStart (0-based start position (inclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowStart" gives direct access to the valuepublic boolean hasWindowStartElement()
public boolean hasWindowStart()
public Sequence.SequenceReferenceSeqComponent setWindowStartElement(IntegerType value)
value - windowStart (0-based start position (inclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowStart" gives direct access to the valuepublic int getWindowStart()
public Sequence.SequenceReferenceSeqComponent setWindowStart(int value)
value - 0-based start position (inclusive) of the window on the reference sequence.public IntegerType getWindowEndElement()
windowEnd (0-based end position (exclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowEnd" gives direct access to the valuepublic boolean hasWindowEndElement()
public boolean hasWindowEnd()
public Sequence.SequenceReferenceSeqComponent setWindowEndElement(IntegerType value)
value - windowEnd (0-based end position (exclusive) of the window on the reference sequence.). This is the underlying object with id, value and extensions. The accessor "getWindowEnd" gives direct access to the valuepublic int getWindowEnd()
public Sequence.SequenceReferenceSeqComponent setWindowEnd(int value)
value - 0-based end position (exclusive) of the window on the reference sequence.protected void listChildren(List<Property> childrenList)
listChildren in class BackboneElementpublic Base[] getProperty(int hash, String name, boolean checkValid) throws org.hl7.fhir.exceptions.FHIRException
getProperty in class BackboneElementorg.hl7.fhir.exceptions.FHIRExceptionpublic void setProperty(int hash, String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
setProperty in class BackboneElementorg.hl7.fhir.exceptions.FHIRExceptionpublic void setProperty(String name, Base value) throws org.hl7.fhir.exceptions.FHIRException
setProperty in class BackboneElementorg.hl7.fhir.exceptions.FHIRExceptionpublic Base makeProperty(int hash, String name) throws org.hl7.fhir.exceptions.FHIRException
makeProperty in class BackboneElementorg.hl7.fhir.exceptions.FHIRExceptionpublic Base addChild(String name) throws org.hl7.fhir.exceptions.FHIRException
addChild in class BackboneElementorg.hl7.fhir.exceptions.FHIRExceptionpublic Sequence.SequenceReferenceSeqComponent copy()
copy in class BackboneElementpublic boolean equalsDeep(Base other)
equalsDeep in class BackboneElementpublic boolean equalsShallow(Base other)
equalsShallow in class BackboneElementpublic boolean isEmpty()
isEmpty in interface org.hl7.fhir.instance.model.api.IBaseisEmpty in class BackboneElementpublic String fhirType()
fhirType in class BackboneElementCopyright © 2014–2018 University Health Network. All rights reserved.